PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF004600020CFD_t1
Common NameTRAES_3BF004600020CFD_c1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YB
Protein Properties Length: 183aa    MW: 19207.3 Da    PI: 6.6739
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF004600020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1711.4e-5340135297
                    NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 
                              +eqdr+lPianv+rimk+vlP nak+sk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p++ yl
  TRAES3BF004600020CFD_t1  40 KEQDRLLPIANVGRIMKQVLPPNAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFSALGFDDYVDPMRRYL 125
                              89************************************************************************************ PP

                    NF-YB  88 kkyrelegek 97 
                               k+releg++
  TRAES3BF004600020CFD_t1 126 LKFRELEGDR 135
                              ********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.8E-4936140IPR009072Histone-fold
SuperFamilySSF471131.26E-3742139IPR009072Histone-fold
PfamPF008081.2E-2645108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.5E-177391No hitNo description
PROSITE patternPS0068507692IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.5E-1792110No hitNo description
PRINTSPR006154.5E-17111129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MADHHYTHLG GGSGSGGGGG GGSPPERLHG GGGSGDQGIK EQDRLLPIAN VGRIMKQVLP  60
PNAKVSKEAK ETMQECVSEF ISFVTGEASD KCHKEKRKTV NGDDVCWAFS ALGFDDYVDP  120
MRRYLLKFRE LEGDRAAAAA SSRGGLPVPD ASTSGAGASG SGNFMFEAMD RRDNTGPGTG  180
RQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4339130192Transcription factor HapC (Eurofung)
4g92_B3e-4339130192Transcription factor HapC (Eurofung)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11222SGSGGGGGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003567445.12e-77PREDICTED: nuclear transcription factor Y subunit B-1-like
SwissprotO822483e-56NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A077RSD11e-133A0A077RSD1_WHEAT; Uncharacterized protein
STRINGMLOC_7755.11e-100(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29173887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.15e-56nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]